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PanGraphViewer is a tool helping to create a graph-based pangenome using a given VCF file with or without a FASTA file. It can also accept a (reference) graphical fragment assembly (GFA) file from other software, such as minigraph and VG. PanGraphViewer shows genome graph in a graphical user interface (GUI) or a webpage.

During graph display, users can customise the layout of a graph. Users can also check genes overlapping with specific genomic regions (nodes). Multiple nodes selection enable users to browse the selected nodes only or the rest nodes only.

PanGraphViewer also provides functions to check the sequence of selected nodes and enable users to browse/download the corresponding sequences when right click the mouse.

PanGraphViewer provides an easy way to display a pangenome graph from (r)GFA or VCF files.



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