All functions
|
angle()
|
Angle of a track object. |
assess()
|
Assess track quality. |
chemotaxis_index()
|
Calculate the mean chemotaxis index of a track object. |
directional_persistence()
|
Calculate the mean directional_persistence of a track object. |
directionality()
|
Directionality of a track object. |
displace()
|
Add spatial displacement per frame for each track object |
distance()
|
Distance traveled and integrated distance traveled of a track object. |
forward_migration_index()
|
Compute the forward migration index of a tracked object |
lifetime()
|
Lifetime of a track object. |
mean_position()
|
Get mean position |
mean_squared_displacement()
|
Mean squared displacement of a track object. |
plot_windrose()
|
Windrose style plot |
sector_analysis()
|
perform sector analysis and label each track according to its direction of movement. |
speed()
|
Calculate speed for each track object in each frame |
summarize_sectors()
|
Summarize sector analysis per experiment |
track()
|
Compute track statistics |
valid_observation_time()
|
calculate valid observation time as sum of the length of all
valid tracks divided by the sum of the length of all tracks |
validate_tracks()
|
Identify valid tracks. Valid tracks are defined as tracks with a life time longer then a predefined value. |