Coverage report for sample: Example


Report details

This report provides an assessment of coverage for Example.

It contains the following sections:

Summary





Exons with <100% coverage at 50x

Of the 15 genes included in the panel, 19 exons in 9 genes had sub optimal-coverage.





To assess what portion of the exon(s) have sub-optimal coverage, the plots below display an interactive window on hovering, showing the coverage at that current base.
The top right also contains a toolbar, with functions such as panning and zooming.







Per gene coverage summary


The following section provides coverage metrics of each gene.
The table below contains metrics for each gene averaged across all of its exons. Plots of each gene are also included below.

Gene Transcript Min Mean Max 10x 20x 30x 50x 100x






Per exon coverage


The following section provides coverage metrics for every exon of each gene.

Gene Transcript Chr Exon Length Start End Min Mean Max 10x 20x 30x 50x 100x


Coverage of Known Variants


Below are tables giving coverage of known variants. The low coverage table gives those not covered at 50x, and the high coverage table contains those covered above 50x.

  • 0 variants were within the given panel regions and included for analysis
  • 0 (0 %) were covered at or above 50x
  • 0 (0 %) variants were not covered at 50x
  • 0 (0 %) variants spanned region boundaries


    • Table of variants with low coverage (< 50x)  
    No variants with coverage < 50x

    Table of variants with high coverage (>= 50x)  
    No variants covered at 50x/b>


       Report generated on 2021-06-29 Report created with Athena