Coverage report for sample: Example 2


Report details

This report provides an assessment of coverage for Example 2.

It contains the following sections:

Summary






Exons with <100% coverage at 100x

Of the 511 genes included in the panel, 255 exons in 164 genes had sub optimal-coverage.



To assess what portion of the exon(s) have sub-optimal coverage, the plots below display an interactive window on hovering, showing the coverage at that current base.
The top right also contains a toolbar, with functions such as panning and zooming.






Per gene coverage summary


The following section provides coverage metrics of each gene.
The table below contains metrics for each gene averaged across all of its exons. Plots of each gene are also included below.

Gene Transcript Min Mean Max 50x 100x 150x 250x







Per exon coverage


The following section provides coverage metrics for every exon of each gene.

Gene Transcript Chr Exon Length Start End Min Mean Max 50x 100x 150x 250x



Coverage of Known Variants


Below are tables giving coverage of known variants. The low coverage table gives those not covered at 100x, and the high coverage table contains those covered above 100x.

  • 0 variants were within the given panel regions and included for analysis
  • 0 (0 %) were covered at or above 100x
  • 0 (0 %) variants were not covered at 100x
  • 0 (0 %) variants spanned region boundaries


  • Variants spanning gene / exon boundaries (e.g. larger structural variants)
    VCF Chromosome Position Ref Alt Info



    Table of variants with low coverage (< 100x)
    VCF Gene Exon Chromosome Position Ref Alt Coverage



    Table of variants with high coverage (>= 100x)  
    VCF Gene Exon Chromosome Position Ref Alt Coverage


    Coverage per chromosome



    The following section provides an overview of global read coverage per chromosome. Please note that if the source data is derived from a target-capture assay, coverage data will be plotted within target regions only.