impy
1.24.3
Tutorial
Viewer Tutorial
API References
impy
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Index
Index
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
add() (impy.viewer.viewer.napariViewers method)
add_axes() (in module impy.utils.axesop)
add_crop_menu() (in module impy.viewer.menus)
add_dask() (in module impy.viewer.utils)
add_duplicate_menu() (in module impy.viewer.menus)
add_explorer_menu() (in module impy.viewer.menus)
add_filter() (impy.viewer.widgets.table.TableWidget method)
(in module impy.viewer.menus)
add_get_props_menu() (in module impy.viewer.menus)
add_imread_menu() (in module impy.viewer.menus)
add_imsave_menu() (in module impy.viewer.menus)
add_label() (impy.arrays.label.Label method)
add_label_menu() (in module impy.viewer.menus)
add_labeledarray() (in module impy.viewer.utils)
add_labels() (in module impy.viewer.utils)
add_layer_to_labels_menu() (in module impy.viewer.menus)
add_note_widget() (in module impy.viewer.menus)
add_parameter_container() (impy.viewer.viewer.napariViewers method)
add_paths() (in module impy.viewer.utils)
add_plane_clipper() (in module impy.viewer.menus)
add_point() (impy.viewer.widgets.table.TableWidget method)
add_points() (in module impy.viewer.utils)
add_proj_menu() (in module impy.viewer.menus)
add_read_csv_menu() (in module impy.viewer.menus)
add_rectangle_editor() (in module impy.viewer.menus)
add_regionprops() (in module impy.viewer.menus)
add_rotator() (in module impy.viewer.menus)
add_shape() (impy.viewer.widgets.table.TableWidget method)
add_surface() (impy.viewer.viewer.napariViewers method)
add_table() (impy.viewer.viewer.napariViewers method)
(in module impy.viewer.utils)
add_text_layer_menu() (in module impy.viewer.menus)
add_threshold() (in module impy.viewer.menus)
add_time_stamper_menu() (in module impy.viewer.menus)
add_tracks() (in module impy.viewer.utils)
add_widgets() (impy.viewer.widgets.table.PlotSetting method)
additional_props (impy.arrays.bases.metaarray.MetaArray attribute)
(impy.arrays.lazy.LazyImgArray attribute)
(impy.arrays.phasearray.PhaseArray attribute)
(impy.arrays.specials.PropArray attribute)
affine() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
affine_correction() (impy.arrays.imgarray.ImgArray method)
append() (impy.collections.DataList method)
(impy.viewer.widgets.log.LoggerWidget method)
(impy.viewer.widgets.results.ResultStackView method)
(impy.viewer.widgets.table.TableWidget method)
append_label() (impy.arrays.labeledarray.LabeledArray method)
appendColumn() (impy.viewer.widgets.table.TableWidget method)
appendPlainText() (impy.viewer.widgets.log.LoggerWidget method)
appendRow() (impy.viewer.widgets.table.TableWidget method)
appendRule() (impy.viewer.widgets.textedit.WordHighlighter method)
apply() (impy.arrays.lazy.LazyImgArray method)
(impy.collections.DataDict method)
(impy.collections.DataList method)
(impy.viewer.widgets.table.PlotSetting method)
apply_dask() (impy.arrays.bases.metaarray.MetaArray method)
apply_dask_func() (impy.arrays.lazy.LazyImgArray method)
area_closing() (impy.arrays.imgarray.ImgArray method)
area_opening() (impy.arrays.imgarray.ImgArray method)
argsort() (impy.axes.Axes method)
array() (in module impy.core)
as_float() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.lazy.LazyImgArray method)
as_frame() (impy.arrays.specials.PropArray method)
as_img_type() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.lazy.LazyImgArray method)
as_larger_type() (impy.arrays.label.Label method)
as_path() (impy.frame.frames.TrackFrame method)
as_standard_type() (impy.frame.frames.AxesFrame method)
as_uint16() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.lazy.LazyImgArray method)
as_uint8() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.lazy.LazyImgArray method)
asarray() (in module impy.core)
aslazy() (in module impy.core)
Axes (class in impy.axes)
axes (impy.arrays.axesmixin.AxesMixin property)
(impy.viewer.viewer.napariViewers property)
axes_included() (in module impy.utils.axesop)
AxesFrame (class in impy.frame.frames)
AxesMixin (class in impy.arrays.axesmixin)
axis_targeted_slicing() (in module impy.utils.slicer)
axisof() (impy.arrays.axesmixin.AxesMixin method)
(impy.viewer.viewer.napariViewers method)
B
best_dtype() (in module impy.arrays.label)
bind (class in impy.binder)
bind() (impy.viewer.viewer.napariViewers method)
bind_protocol() (impy.viewer.viewer.napariViewers method)
binning() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
(impy.arrays.phasearray.PhaseArray method)
bound (impy.binder.bind attribute)
C
cache (impy.viewer.widgets.gui.ThresholdAndLabel attribute)
centroid_sm() (impy.arrays.imgarray.ImgArray method)
change_plot_setting() (impy.viewer.widgets.table.TableWidget method)
change_setting() (impy.viewer.widgets.table.PlotSetting method)
change_wrap_mode() (impy.viewer.widgets.textedit.TxtFileWidget method)
check_filter_func() (in module impy.arrays.imgarray)
check_is_sorted() (impy.axes.Axes method)
check_nd() (in module impy.utils.misc)
check_none() (in module impy.axes)
chunk_info (impy.arrays.lazy.LazyImgArray property)
chunksize (impy.arrays.lazy.LazyImgArray property)
chunksizeof() (impy.arrays.lazy.LazyImgArray method)
chunksizesof() (impy.arrays.lazy.LazyImgArray method)
circular_mask() (in module impy.core)
clear() (impy.viewer.widgets.results.ResultStackView method)
clip() (impy.arrays.imgarray.ImgArray method)
close_anyway() (in module impy.viewer.widgets.dialog)
closing() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
coef_filter() (impy.arrays.imgarray.ImgArray method)
col_axes (impy.frame.frames.AxesFrame property)
ColorCycle (class in impy.viewer.utils)
complement_axes() (in module impy.utils.axesop)
connectLayer() (impy.viewer.widgets.plane_clip.PlaneClipRange method)
convex_hull() (impy.arrays.imgarray.ImgArray method)
convolve() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
copy() (impy.axes.Axes method)
copy_as_dataframe() (impy.viewer.widgets.table.TableWidget method)
copy_layer() (in module impy.viewer.utils)
copy_path_at() (impy.viewer.widgets.explorer.FileTree method)
corner_harris() (impy.arrays.imgarray.ImgArray method)
corner_peaks() (impy.arrays.imgarray.ImgArray method)
count_neighbors() (impy.arrays.imgarray.ImgArray method)
crop_center() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.lazy.LazyImgArray method)
crop_kernel() (impy.arrays.labeledarray.LabeledArray method)
crop_rectangle() (in module impy.viewer.utils)
crop_rotated_rectangle() (in module impy.viewer.utils)
current_slice (impy.viewer.viewer.napariViewers property)
cursor_pos (impy.viewer.viewer.napariViewers property)
cursor_to_pixel() (impy.viewer.viewer.napariViewers method)
curve_fit() (impy.arrays.specials.PropArray method)
D
data (impy.arrays.lazy.LazyImgArray property)
data() (impy.viewer.widgets.explorer.FileSystemModel method)
DataDict (class in impy.collections)
DataList (class in impy.collections)
defineFormat() (impy.viewer.widgets.textedit.Regex method)
deg2rad() (impy.arrays.phasearray.PhaseArray method)
del_axis() (in module impy.utils.axesop)
delete_label() (impy.arrays.label.Label method)
delete_selected_columns() (impy.viewer.widgets.table.TableWidget method)
delete_selected_rows() (impy.viewer.widgets.table.TableWidget method)
delete_self() (impy.viewer.widgets.table.TableWidget method)
(impy.viewer.widgets.textedit.TxtFileWidget method)
diagonal_gaussian() (in module impy.utils.gauss)
DiagonalGaussian (class in impy.utils.gauss)
diameter_closing() (impy.arrays.imgarray.ImgArray method)
diameter_opening() (impy.arrays.imgarray.ImgArray method)
dilation() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
dims_to_spatial_axes() (in module impy.utils.deco)
dirpath (impy.arrays.bases.historyarray.HistoryArray attribute)
(impy.arrays.bases.metaarray.MetaArray attribute)
(impy.arrays.imgarray.ImgArray attribute)
(impy.arrays.label.Label attribute)
(impy.arrays.labeledarray.LabeledArray attribute)
(impy.arrays.phasearray.PhaseArray attribute)
(impy.arrays.specials.PropArray attribute)
distance_map() (impy.arrays.imgarray.ImgArray method)
dog_filter() (impy.arrays.imgarray.ImgArray method)
doh_filter() (impy.arrays.imgarray.ImgArray method)
drift_correction() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
dtype (impy.arrays.lazy.LazyImgArray property)
duplicate_current_step() (impy.viewer.widgets.dialog.DuplicateDialog method)
duplicate_sliced_layer() (impy.viewer.widgets.dialog.DuplicateDialog method)
DuplicateDialog (class in impy.viewer.widgets.dialog)
E
edge_filter() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
edge_grad() (impy.arrays.imgarray.ImgArray method)
empty() (in module impy.core)
emsd() (impy.frame.frames.TrackFrame method)
enhance_contrast() (impy.arrays.imgarray.ImgArray method)
entropy_filter() (impy.arrays.imgarray.ImgArray method)
erosion() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
estimate_sigma() (impy.arrays.imgarray.ImgArray method)
expand_labels() (impy.arrays.label.Label method)
Explorer (class in impy.viewer.widgets.explorer)
extend() (impy.collections.DataList method)
extract() (impy.arrays.labeledarray.LabeledArray method)
F
fft() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
fig (impy.viewer.viewer.napariViewers property)
FileSystemModel (class in impy.viewer.widgets.explorer)
FileTree (class in impy.viewer.widgets.explorer)
fill_hole() (impy.arrays.imgarray.ImgArray method)
filter_stubs() (impy.frame.frames.TrackFrame method)
filterRows() (impy.viewer.widgets.table.TableWidget method)
FilterWidget (class in impy.viewer.widgets.table)
find() (impy.axes.Axes method)
find_corners() (impy.arrays.imgarray.ImgArray method)
find_first_appeared() (in module impy.utils.axesop)
find_sm() (impy.arrays.imgarray.ImgArray method)
fit() (impy.utils.gauss.DiagonalGaussian method)
fix_border() (impy.arrays.phasearray.PhaseArray method)
flood() (impy.arrays.imgarray.ImgArray method)
flush() (impy.viewer.widgets.log.LoggerWidget method)
focus_map() (impy.arrays.imgarray.ImgArray method)
focus_next() (in module impy.viewer.keybinds)
focus_previous() (in module impy.viewer.keybinds)
for_each_channel() (impy.arrays.labeledarray.LabeledArray method)
for_params() (impy.arrays.labeledarray.LabeledArray method)
fourier_ncc() (in module impy.correlation)
fourier_shell_correlation() (in module impy.correlation)
fourier_zncc() (in module impy.correlation)
front_image() (in module impy.viewer.utils)
fsc() (in module impy.correlation)
ft_pcc_maximum() (in module impy.correlation)
full() (in module impy.core)
function_handler() (in module impy.viewer.menus)
FunctionCaller (class in impy.viewer.widgets.gui)
G
gabor_angle() (impy.arrays.imgarray.ImgArray method)
gabor_filter() (impy.arrays.imgarray.ImgArray method)
gauss_correction() (impy.arrays.imgarray.ImgArray method)
gauss_sm() (impy.arrays.imgarray.ImgArray method)
gaussfit() (impy.arrays.imgarray.ImgArray method)
Gaussian (class in impy.utils.gauss)
gaussian_filter() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
gaussian_kernel() (in module impy.core)
GaussianBackground (class in impy.utils.gauss)
GaussianParticle (class in impy.utils.gauss)
gb (impy.arrays.lazy.LazyImgArray property)
generate() (impy.utils.gauss.DiagonalGaussian method)
get() (impy.viewer.viewer.napariViewers method)
get_a_selected_layer() (in module impy.viewer.utils)
get_coords() (impy.frame.frames.AxesFrame method)
get_imsave_meta_from_img() (in module impy.utils.io)
get_scale_from_meta() (in module impy.utils.io)
get_selected_shapes_layer() (impy.viewer.widgets.gui.RectangleEditor method)
get_time_stamp() (in module impy.viewer.widgets.explorer)
get_viewer_scale() (in module impy.viewer.utils)
glcm_props() (impy.arrays.imgarray.ImgArray method)
goto() (impy.viewer.viewer.napariViewers method)
H
header (impy.viewer.widgets.table.TableWidget property)
header_as_tuple (impy.viewer.widgets.table.TableWidget property)
header_to_row() (impy.viewer.widgets.table.TableWidget method)
hessian_angle() (impy.arrays.imgarray.ImgArray method)
hessian_eig() (impy.arrays.imgarray.ImgArray method)
hessian_eigval() (impy.arrays.imgarray.ImgArray method)
hide_others() (in module impy.viewer.keybinds)
highlightBlock() (impy.viewer.widgets.textedit.WordHighlighter method)
highpass_filter() (impy.arrays.imgarray.ImgArray method)
hist() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.specials.PropArray method)
(impy.viewer.widgets.table.TableWidget method)
history (impy.viewer.widgets.dialog.RegionPropsDialog attribute)
HistoryArray (class in impy.arrays.bases.historyarray)
I
ifft() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
image_tuple() (in module impy.viewer.utils)
ImageAxesError
ImageProjectionDialog (class in impy.viewer.widgets.dialog)
ImgArray (class in impy.arrays.imgarray)
implements() (impy.arrays.bases.metaarray.MetaArray class method)
ImportOnRequest (class in impy.utils.utilcls)
impy
module
impy.arrays
module
impy.arrays.axesmixin
module
impy.arrays.bases
module
impy.arrays.bases.historyarray
module
impy.arrays.bases.metaarray
module
impy.arrays.bases.overload
module
impy.arrays.imgarray
module
impy.arrays.label
module
impy.arrays.labeledarray
module
impy.arrays.lazy
module
impy.arrays.phasearray
module
impy.arrays.specials
module
impy.arrays.utils
module
impy.axes
module
impy.binder
module
impy.collections
module
impy.core
module
impy.correlation
module
impy.frame
module
impy.frame.frames
module
impy.utils
module
impy.utils.axesop
module
impy.utils.deco
module
impy.utils.gauss
module
impy.utils.io
module
impy.utils.misc
module
impy.utils.slicer
module
impy.utils.utilcls
module
impy.viewer
module
impy.viewer.keybinds
module
impy.viewer.menus
module
impy.viewer.mouse
module
impy.viewer.utils
module
impy.viewer.viewer
module
impy.viewer.widgets
module
impy.viewer.widgets.dialog
module
impy.viewer.widgets.explorer
module
impy.viewer.widgets.gui
module
impy.viewer.widgets.log
module
impy.viewer.widgets.plane_clip
module
impy.viewer.widgets.results
module
impy.viewer.widgets.table
module
impy.viewer.widgets.textedit
module
imread() (in module impy.core)
imread_collection() (in module impy.core)
imsave() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.lazy.LazyImgArray method)
imsd() (impy.frame.frames.TrackFrame method)
imshow() (impy.arrays.label.Label method)
(impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.phasearray.PhaseArray method)
imshow_comparewith() (impy.arrays.labeledarray.LabeledArray method)
imshow_label() (impy.arrays.labeledarray.LabeledArray method)
imwrite() (in module impy.utils.io)
increment() (impy.arrays.label.Label method)
increment_iter() (impy.arrays.label.Label method)
initText() (impy.viewer.widgets.textedit.TxtFileWidget method)
is_none() (impy.axes.Axes method)
is_sorted() (impy.axes.Axes method)
itemsize (impy.arrays.lazy.LazyImgArray property)
iter() (impy.arrays.bases.metaarray.MetaArray method)
(impy.frame.frames.AxesFrame method)
iter_layer() (in module impy.viewer.utils)
iter_selected_layer() (in module impy.viewer.utils)
K
kalman_filter() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
key_repr() (in module impy.utils.slicer)
keyPressEvent() (impy.viewer.widgets.explorer.FileTree method)
L
Label (class in impy.arrays.label)
label() (impy.arrays.labeledarray.LabeledArray method)
label_if() (impy.arrays.labeledarray.LabeledArray method)
label_threshold() (impy.arrays.imgarray.ImgArray method)
label_tuple() (in module impy.viewer.utils)
LabeledArray (class in impy.arrays.labeledarray)
LabelProjectionDialog (class in impy.viewer.widgets.dialog)
laplacian_filter() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
largest_zeros() (in module impy.utils.misc)
last_added (impy.binder.bind attribute)
layer_template_matcher() (in module impy.viewer.menus)
layer_to_impy_object() (in module impy.viewer.utils)
layers (impy.viewer.viewer.napariViewers property)
lazy_imread() (in module impy.core)
LazyImgArray (class in impy.arrays.lazy)
lbp() (impy.arrays.imgarray.ImgArray method)
length() (impy.frame.frames.PathFrame method)
lineprops() (impy.arrays.imgarray.ImgArray method)
link() (impy.frame.frames.MarkerFrame method)
linked_layer (impy.viewer.widgets.table.TableWidget property)
local_dft() (impy.arrays.imgarray.ImgArray method)
local_power_spectra() (impy.arrays.imgarray.ImgArray method)
log (impy.viewer.viewer.napariViewers property)
log_filter() (impy.arrays.imgarray.ImgArray method)
LoggerWidget (class in impy.viewer.widgets.log)
lowpass_conv_filter() (impy.arrays.imgarray.ImgArray method)
lowpass_filter() (impy.arrays.imgarray.ImgArray method)
lucy() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
lucy_tv() (impy.arrays.imgarray.ImgArray method)
M
make_history() (in module impy.utils.deco)
make_world_scale() (in module impy.viewer.utils)
manders_coloc() (in module impy.correlation)
MarkerFrame (class in impy.frame.frames)
MAX_ROW_NUMBER (impy.viewer.widgets.results.ResultStackView attribute)
mean_filter() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
(impy.arrays.phasearray.PhaseArray method)
median_filter() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
memmap() (in module impy.utils.io)
MetaArray (class in impy.arrays.bases.metaarray)
module
impy
impy.arrays
impy.arrays.axesmixin
impy.arrays.bases
impy.arrays.bases.historyarray
impy.arrays.bases.metaarray
impy.arrays.bases.overload
impy.arrays.imgarray
impy.arrays.label
impy.arrays.labeledarray
impy.arrays.lazy
impy.arrays.phasearray
impy.arrays.specials
impy.arrays.utils
impy.axes
impy.binder
impy.collections
impy.core
impy.correlation
impy.frame
impy.frame.frames
impy.utils
impy.utils.axesop
impy.utils.deco
impy.utils.gauss
impy.utils.io
impy.utils.misc
impy.utils.slicer
impy.utils.utilcls
impy.viewer
impy.viewer.keybinds
impy.viewer.menus
impy.viewer.mouse
impy.viewer.utils
impy.viewer.viewer
impy.viewer.widgets
impy.viewer.widgets.dialog
impy.viewer.widgets.explorer
impy.viewer.widgets.gui
impy.viewer.widgets.log
impy.viewer.widgets.plane_clip
impy.viewer.widgets.results
impy.viewer.widgets.table
impy.viewer.widgets.textedit
msd() (impy.frame.frames.TrackFrame method)
mu (impy.utils.gauss.DiagonalGaussian property)
mu_inrange() (impy.utils.gauss.Gaussian method)
N
n_ongoing (impy.utils.utilcls.Progress attribute)
n_table (impy.viewer.widgets.table.TableWidget attribute)
name (impy.arrays.bases.historyarray.HistoryArray attribute)
(impy.arrays.bases.metaarray.MetaArray attribute)
(impy.arrays.imgarray.ImgArray attribute)
(impy.arrays.label.Label attribute)
(impy.arrays.labeledarray.LabeledArray attribute)
(impy.arrays.phasearray.PhaseArray attribute)
(impy.arrays.specials.PropArray attribute)
napariViewers (class in impy.viewer.viewer)
ncc() (in module impy.correlation)
ncc_filter() (impy.arrays.imgarray.ImgArray method)
ndim (impy.arrays.axesmixin.AxesMixin attribute)
(impy.arrays.lazy.LazyImgArray property)
(impy.utils.gauss.DiagonalGaussian property)
newRow() (impy.viewer.widgets.table.TableWidget method)
nmi() (in module impy.correlation)
NoneAxes (class in impy.axes)
now (impy.utils.utilcls.Timer property)
NP_DISPATCH (impy.arrays.bases.metaarray.MetaArray attribute)
nrule (impy.viewer.widgets.textedit.WordHighlighter property)
O
ok() (impy.viewer.widgets.table.PlotSetting method)
onDoubleClicked() (impy.viewer.widgets.explorer.FileTree method)
ones() (in module impy.core)
open_as_dask() (in module impy.utils.io)
open_img() (in module impy.utils.io)
open_mrc() (in module impy.utils.io)
open_path_at() (impy.viewer.widgets.explorer.FileTree method)
open_tif() (in module impy.utils.io)
opening() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.label.Label method)
(impy.arrays.lazy.LazyImgArray method)
optimize() (impy.arrays.label.Label method)
P
pad() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
pad_defocus() (impy.arrays.imgarray.ImgArray method)
params (impy.utils.gauss.DiagonalGaussian property)
(impy.viewer.viewer.napariViewers property)
PathFrame (class in impy.frame.frames)
pathprops() (impy.arrays.imgarray.ImgArray method)
pcc_maximum() (in module impy.correlation)
peak_local_max() (impy.arrays.imgarray.ImgArray method)
pearson_coloc() (in module impy.correlation)
periodicity (impy.arrays.phasearray.PhaseArray property)
PhaseArray (class in impy.arrays.phasearray)
PlaneClipRange (class in impy.viewer.widgets.plane_clip)
plot() (impy.arrays.specials.PropArray method)
(impy.viewer.widgets.table.TableWidget method)
PlotSetting (class in impy.viewer.widgets.table)
pointprops() (impy.arrays.imgarray.ImgArray method)
pop() (impy.viewer.widgets.results.ResultStackView method)
popRule() (impy.viewer.widgets.textedit.WordHighlighter method)
power_spectra() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
preview() (impy.viewer.viewer.napariViewers method)
Progress (class in impy.utils.utilcls)
proj() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.label.Label method)
(impy.arrays.lazy.LazyImgArray method)
(impy.frame.frames.AxesFrame method)
proj_labels() (impy.arrays.labeledarray.LabeledArray method)
ProjectionDialog (class in impy.viewer.widgets.dialog)
PropArray (class in impy.arrays.specials)
R
rad2deg() (impy.arrays.phasearray.PhaseArray method)
radial_profile() (impy.arrays.imgarray.ImgArray method)
Random (class in impy)
random_walker() (impy.arrays.imgarray.ImgArray method)
range (impy.arrays.labeledarray.LabeledArray property)
read_csv() (in module impy.viewer.widgets.table)
read_meta() (in module impy.core)
read_txt() (in module impy.viewer.widgets.textedit)
rechunk() (impy.arrays.lazy.LazyImgArray method)
record() (in module impy.utils.deco)
record_lazy() (in module impy.utils.deco)
RectangleEditor (class in impy.viewer.widgets.gui)
refine_sm() (impy.arrays.imgarray.ImgArray method)
Regex (class in impy.viewer.widgets.textedit)
regionprops() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.phasearray.PhaseArray method)
RegionPropsDialog (class in impy.viewer.widgets.dialog)
register_point() (impy.viewer.viewer.napariViewers method)
register_shape() (impy.viewer.viewer.napariViewers method)
relabel() (impy.arrays.label.Label method)
release() (impy.arrays.lazy.LazyImgArray method)
remove_edges() (impy.arrays.labeledarray.LabeledArray method)
remove_fine_objects() (impy.arrays.imgarray.ImgArray method)
remove_large_objects() (impy.arrays.imgarray.ImgArray method)
remove_skeleton_structure() (impy.arrays.imgarray.ImgArray method)
replace() (impy.axes.Axes method)
rescale() (impy.arrays.imgarray.ImgArray method)
(impy.utils.gauss.DiagonalGaussian method)
rescale_intensity() (impy.arrays.imgarray.ImgArray method)
reset_view() (in module impy.viewer.keybinds)
resetX() (impy.viewer.widgets.plane_clip.PlaneClipRange method)
resetY() (impy.viewer.widgets.plane_clip.PlaneClipRange method)
resetZ() (impy.viewer.widgets.plane_clip.PlaneClipRange method)
reslice() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.phasearray.PhaseArray method)
(in module impy.viewer.keybinds)
restore_linked_layer() (impy.viewer.widgets.table.TableWidget method)
results (impy.viewer.viewer.napariViewers property)
ResultStackView (class in impy.viewer.widgets.results)
rightClickContextMenu() (impy.viewer.widgets.explorer.FileTree method)
rof_filter() (impy.arrays.imgarray.ImgArray method)
rolling_ball() (impy.arrays.imgarray.ImgArray method)
rotate() (impy.arrays.imgarray.ImgArray method)
rotated_crop() (impy.arrays.labeledarray.LabeledArray method)
(impy.arrays.lazy.LazyImgArray method)
Rotator (class in impy.viewer.widgets.gui)
run() (impy.viewer.widgets.dialog.DuplicateDialog method)
(impy.viewer.widgets.dialog.ImageProjectionDialog method)
(impy.viewer.widgets.dialog.LabelProjectionDialog method)
(impy.viewer.widgets.dialog.RegionPropsDialog method)
(impy.viewer.widgets.dialog.TimeStamper method)
S
safe_set_info() (in module impy.arrays.bases.overload)
same_dtype() (in module impy.utils.deco)
sample_image() (in module impy.core)
save_as_csv() (impy.viewer.widgets.table.TableWidget method)
scale (impy.arrays.axesmixin.AxesMixin property)
(impy.axes.Axes property)
(impy.frame.frames.AxesFrame property)
(impy.viewer.viewer.napariViewers property)
scale_unit (impy.arrays.axesmixin.AxesMixin property)
ScaleDict (class in impy.axes)
selected (impy.viewer.widgets.explorer.FileTree property)
selection (impy.viewer.viewer.napariViewers property)
set_border() (impy.arrays.phasearray.PhaseArray method)
set_filter() (impy.viewer.widgets.explorer.FileTree method)
set_header() (impy.viewer.widgets.table.TableWidget method)
set_header_and_properties() (impy.viewer.widgets.table.TableWidget method)
set_scale() (impy.arrays.axesmixin.AxesMixin method)
(impy.arrays.labeledarray.LabeledArray method)
(impy.frame.frames.AxesFrame method)
setLogger (class in impy.viewer.viewer)
setText() (impy.viewer.widgets.textedit.TxtFileWidget method)
sg (impy.utils.gauss.DiagonalGaussian property)
sg_inrange() (impy.utils.gauss.Gaussian method)
shape (impy.arrays.axesmixin.AxesMixin attribute)
(impy.arrays.bases.metaarray.MetaArray property)
(impy.arrays.lazy.LazyImgArray property)
shape_info (impy.arrays.axesmixin.AxesMixin property)
shift() (impy.utils.gauss.DiagonalGaussian method)
showinfo() (impy.arrays.bases.metaarray.MetaArray method)
size (impy.arrays.lazy.LazyImgArray property)
sizeof() (impy.arrays.axesmixin.AxesMixin method)
sizesof() (impy.arrays.axesmixin.AxesMixin method)
skeletonize() (impy.arrays.imgarray.ImgArray method)
sort() (impy.axes.Axes method)
(impy.frame.frames.AxesFrame method)
sort_axes() (impy.arrays.bases.metaarray.MetaArray method)
(impy.arrays.lazy.LazyImgArray method)
sorted() (impy.axes.Axes method)
spatial_shape (impy.arrays.axesmixin.AxesMixin property)
specify() (impy.arrays.labeledarray.LabeledArray method)
split() (impy.arrays.bases.historyarray.HistoryArray method)
(impy.arrays.labeledarray.LabeledArray method)
(impy.frame.frames.AxesFrame method)
split_pixel_unit() (impy.arrays.imgarray.ImgArray method)
square() (in module impy.utils.gauss)
start() (impy.viewer.viewer.napariViewers method)
std_filter() (impy.arrays.imgarray.ImgArray method)
stepof() (impy.viewer.viewer.napariViewers method)
stokes() (impy.arrays.imgarray.ImgArray method)
store_as_dataframe() (impy.viewer.widgets.table.TableWidget method)
str_to_slice() (in module impy.utils.slicer)
stretch() (impy.arrays.imgarray.ImgArray method)
structure_tensor_eig() (impy.arrays.imgarray.ImgArray method)
structure_tensor_eigval() (impy.arrays.imgarray.ImgArray method)
switch_slice() (in module impy.utils.axesop)
T
table (impy.viewer.viewer.napariViewers property)
TableWidget (class in impy.viewer.widgets.table)
threshold() (impy.arrays.imgarray.ImgArray method)
ThresholdAndLabel (class in impy.viewer.widgets.gui)
tic() (impy.utils.utilcls.Timer method)
tile() (impy.arrays.bases.historyarray.HistoryArray method)
(impy.arrays.labeledarray.LabeledArray method)
tiled_lowpass_filter() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
Timer (class in impy.utils.utilcls)
TimeStamper (class in impy.viewer.widgets.dialog)
to_dataframe() (impy.viewer.widgets.table.TableWidget method)
to_front() (in module impy.viewer.keybinds)
to_labels() (in module impy.viewer.utils)
toc() (impy.utils.utilcls.Timer method)
tophat() (impy.arrays.imgarray.ImgArray method)
tp_no_verbose() (in module impy.frame.frames)
track_drift() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
(impy.frame.frames.TrackFrame method)
track_template() (impy.arrays.imgarray.ImgArray method)
TrackFrame (class in impy.frame.frames)
transpose() (impy.arrays.bases.metaarray.MetaArray method)
(impy.arrays.lazy.LazyImgArray method)
try_max_chunk() (impy.arrays.lazy.LazyImgArray method)
TxtFileWidget (class in impy.viewer.widgets.textedit)
TxtViewer (class in impy.viewer.widgets.textedit)
U
unmix() (impy.arrays.imgarray.ImgArray method)
update() (impy.utils.utilcls.Progress method)
update_widget() (impy.viewer.widgets.gui.FunctionCaller method)
updateX() (impy.viewer.widgets.plane_clip.PlaneClipRange method)
updateY() (impy.viewer.widgets.plane_clip.PlaneClipRange method)
updateZ() (impy.viewer.widgets.plane_clip.PlaneClipRange method)
upon_add_layer() (in module impy.viewer.utils)
use_logger() (impy.viewer.viewer.napariViewers method)
V
value (impy.arrays.bases.metaarray.MetaArray property)
viewer (impy.viewer.viewer.napariViewers property)
viewer_imread() (in module impy.viewer.utils)
voronoi() (impy.arrays.imgarray.ImgArray method)
W
watershed() (impy.arrays.imgarray.ImgArray method)
wavelet_denoising() (impy.arrays.imgarray.ImgArray method)
wiener() (impy.arrays.imgarray.ImgArray method)
(impy.arrays.lazy.LazyImgArray method)
WordHighlighter (class in impy.viewer.widgets.textedit)
write() (impy.viewer.widgets.log.LoggerWidget method)
X
xmaxPlane (impy.viewer.widgets.plane_clip.PlaneClipRange property)
xminPlane (impy.viewer.widgets.plane_clip.PlaneClipRange property)
Y
ymaxPlane (impy.viewer.widgets.plane_clip.PlaneClipRange property)
yminPlane (impy.viewer.widgets.plane_clip.PlaneClipRange property)
Z
zeros() (in module impy.core)
zmaxPlane (impy.viewer.widgets.plane_clip.PlaneClipRange property)
zminPlane (impy.viewer.widgets.plane_clip.PlaneClipRange property)
zncc() (in module impy.correlation)