Index

_

__init__() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.data.biodatasets.ChestXrayDataset method) (farabio.data.biodatasets.DSB18Dataset method) (farabio.data.biodatasets.HistocancerDataset method) (farabio.data.biodatasets.RANZCRDataset method) (farabio.data.biodatasets.RetinopathyDataset method) (farabio.utils.losses.DiceBCELoss method) (farabio.utils.losses.DiceLoss method) (farabio.utils.losses.FocalLoss method) (farabio.utils.losses.FocalTverskyLoss method) (farabio.utils.losses.IoULoss method) (farabio.utils.losses.LovaszHingeLoss method) (farabio.utils.losses.TverskyLoss method)

_cfg_attunet() (in module farabio.core.configs) _cfg_cyclegan() (in module farabio.core.configs) _cfg_fasterrcnn() (in module farabio.core.configs) _cfg_srgan() (in module farabio.core.configs) _cfg_unet() (in module farabio.core.configs) _cfg_yolov3() (in module farabio.core.configs)

A

approx_bcg() (farabio.data.imgops.ImgOps method)

AttunetTrainer (class in farabio.models.segmentation.attunet.attunet_trainer)

B

BaseTrainer (class in farabio.core.basetrainer) blend_img() (farabio.data.imgops.ImgOps method) blend_imgs() (farabio.data.imgops.ImgOps static method) build_model() (farabio.core.basetrainer.BaseTrainer method) (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method)

build_parallel_model() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method)

C

ChestXrayDataset (class in farabio.data.biodatasets) ClassTrainer (class in farabio.models.classification.class_trainer)

ConvnetTrainer (class in farabio.core.convnettrainer) cycle_g_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) CycleganTrainer (class in farabio.models.translation.cyclegan.cyclegan_trainer)

D

default_attr() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) define_compute_attr() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) define_data_attr() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) define_log_attr() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) define_misc_attr() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) define_model_attr() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method)

define_test_attr() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) define_train_attr() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) del_files() (farabio.data.dirops.DirOps method) detect_perform() (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) DiceBCELoss (class in farabio.utils.losses) DiceLoss (class in farabio.utils.losses) dirinfo() (farabio.data.dirops.DirOps method) DirOps (class in farabio.data.dirops) discriminator_backward() (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) discriminator_loss() (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) discriminator_optim_step() (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) discriminator_zero_grad() (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) discriminatorA_backward() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) discriminatorA_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) discriminatorA_optim_step() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) discriminatorA_zero_grad() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) discriminatorB_backward() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) discriminatorB_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) discriminatorB_optim_step() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) discriminatorB_zero_grad() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) DSB18Dataset (class in farabio.data.biodatasets)

E

evaluate() (farabio.core.basetrainer.BaseTrainer method) evaluate_batch() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method)

evaluate_epoch() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) exit_trainer() (farabio.core.convnettrainer.ConvnetTrainer method)

F

fake_dA_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) fake_dB_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) FasterRCNNTrainer (class in farabio.models.detection.faster_rcnn.faster_rcnn_trainer) FocalLoss (class in farabio.utils.losses) FocalTverskyLoss (class in farabio.utils.losses) format_image() (farabio.data.biodatasets.DSB18Dataset static method) format_mask() (farabio.data.biodatasets.DSB18Dataset static method)

forward() (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.utils.losses.DiceBCELoss method) (farabio.utils.losses.DiceLoss method) (farabio.utils.losses.FocalLoss method) (farabio.utils.losses.FocalTverskyLoss method) (farabio.utils.losses.IoULoss method) (farabio.utils.losses.LovaszHingeLoss method) (farabio.utils.losses.TverskyLoss method)

G

gan_g_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) GanTrainer (class in farabio.core.gantrainer) generate_result_img() (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) generator_backward() (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) generator_loss() (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) generator_optim_step() (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) generator_zero_grad() (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) get_dataloader() (farabio.core.gantrainer.GanTrainer method) get_date() (farabio.data.imgops.ImgOps method) get_detections() (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) get_mask() (farabio.data.biodatasets.DSB18Dataset method) get_meter_data() (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) get_testloader() (farabio.core.basetrainer.BaseTrainer method) (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method)

get_train_transform() (farabio.data.biodatasets.ChestXrayDataset method) (farabio.data.biodatasets.DSB18Dataset method) (farabio.data.biodatasets.HistocancerDataset static method) get_trainloader() (farabio.core.basetrainer.BaseTrainer method) (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) get_transform() (farabio.data.biodatasets.RANZCRDataset method) get_valid_transform() (farabio.data.biodatasets.HistocancerDataset static method)

H

HistocancerDataset (class in farabio.data.biodatasets)

I

identity_g_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) ImgOps (class in farabio.data.imgops) imshow() (farabio.data.biodatasets.ChestXrayDataset static method)

init_attr() (farabio.core.basetrainer.BaseTrainer method) (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) IoULoss (class in farabio.utils.losses)

L

load_model() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) load_parallel_model() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method)

loss_backward() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) LovaszHingeLoss (class in farabio.utils.losses) lsmedia() (farabio.data.dirops.DirOps method)

M

mask_img() (farabio.data.imgops.ImgOps method)

O

on_end_test_batch() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) on_end_training_batch() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) on_epoch_end() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) on_evaluate_batch_end() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) on_evaluate_batch_start() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) on_evaluate_end() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) on_evaluate_epoch_end() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) on_evaluate_epoch_start() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method)

on_evaluate_start() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) on_start_test_batch() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) on_start_training_batch() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) on_test_end() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) on_test_start() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) on_train_end() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) on_train_epoch_end() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) on_train_epoch_start() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) on_train_start() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) optimizer_step() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) optimizer_zero_grad() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method)

P

pad_img() (farabio.data.imgops.ImgOps method) plot_bbox() (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method)

print_imginfo() (farabio.data.imgops.ImgOps method) profile_img() (farabio.data.imgops.ImgOps method)

R

random_flip() (farabio.data.imgops.ImgOps static method) RANZCRDataset (class in farabio.data.biodatasets) read_image() (farabio.data.imgops.ImgOps static method)

real_dA_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) real_dB_loss() (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) reset_meters() (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) RetinopathyDataset (class in farabio.data.biodatasets)

S

save() (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) save_csv() (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) save_model() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) save_parallel_model() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) seed_everything() (farabio.models.classification.transformer_trainer.TransformerTrainer method)

show_model_summary() (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) slice_img() (farabio.data.imgops.ImgOps method) split_traintest() (farabio.data.dirops.DirOps method) SrganTrainer (class in farabio.models.superres.srgan.srgan_trainer) start_logger() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) stop_train() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method)

T

test() (farabio.core.basetrainer.BaseTrainer method) (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) test_batch() (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) test_loop() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) test_step() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method) train() (farabio.core.basetrainer.BaseTrainer method) (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) train_batch() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) (farabio.models.superres.srgan.srgan_trainer.SrganTrainer method) (farabio.models.translation.cyclegan.cyclegan_trainer.CycleganTrainer method)

train_epoch() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) train_loop() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.core.gantrainer.GanTrainer method) training (farabio.utils.losses.DiceBCELoss attribute) (farabio.utils.losses.DiceLoss attribute) (farabio.utils.losses.FocalLoss attribute) (farabio.utils.losses.FocalTverskyLoss attribute) (farabio.utils.losses.IoULoss attribute) (farabio.utils.losses.LovaszHingeLoss attribute) (farabio.utils.losses.TverskyLoss attribute) training_step() (farabio.core.convnettrainer.ConvnetTrainer method) (farabio.models.classification.class_trainer.ClassTrainer method) (farabio.models.classification.transformer_trainer.TransformerTrainer method) (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) (farabio.models.detection.yolov3.yolo_trainer.YoloTrainer method) (farabio.models.segmentation.attunet.attunet_trainer.AttunetTrainer method) (farabio.models.segmentation.unet.unet_trainer.UnetTrainer method) TransformerTrainer (class in farabio.models.classification.transformer_trainer) TverskyLoss (class in farabio.utils.losses)

U

UnetTrainer (class in farabio.models.segmentation.unet.unet_trainer)

update_meters() (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method)

V

visdom_plot() (farabio.models.detection.faster_rcnn.faster_rcnn_trainer.FasterRCNNTrainer method) visualize_dataset() (farabio.data.biodatasets.ChestXrayDataset method) (farabio.data.biodatasets.DSB18Dataset method) (farabio.data.biodatasets.HistocancerDataset method) (farabio.data.biodatasets.RANZCRDataset method) (farabio.data.biodatasets.RetinopathyDataset method)

Y

YoloTrainer (class in farabio.models.detection.yolov3.yolo_trainer)